Scientific gems for Ruby. This is the full installation with rigid version constraints.

A suite for basic and advanced statistics on Ruby. Tested on CRuby 1.9.3, 2.0.0 and 2.1.1. See `.travis.yml` for more information. Include: - Descriptive statistics: frequencies, median, mean, standard error, skew, kurtosis (and many others). - Correlations: Pearson's r, Spearman's rank correlation (rho), point biserial, tau a, tau b and gamma. Tetrachoric and Polychoric correlation provides by statsample-bivariate-extension gem. - Intra-class correlation - Anova: generic and vector-based One-way ANOVA and Two-way ANOVA, with contrasts for One-way ANOVA. - Tests: F, T, Levene, U-Mannwhitney. - Regression: Simple, Multiple (OLS), Probit and Logit - Factorial Analysis: Extraction (PCA and Principal Axis), Rotation (Varimax, Equimax, Quartimax) and Parallel Analysis and Velicer's MAP test, for estimation of number of factors. - Reliability analysis for simple scale and a DSL to easily analyze multiple scales using factor analysis and correlations, if you want it. - Dominance Analysis, with multivariate dependent and bootstrap (Azen & Budescu) - Sample calculation related formulas - Structural Equation Modeling (SEM), using R libraries +sem+ and +OpenMx+ - Creates reports on text, html and rtf, using ReportBuilder gem - Graphics: Histogram, Boxplot and Scatterplot.

bio-ngs provides a framework for handling NGS data with BioRuby

bio-ngs provides a framework for handling NGS data with BioRuby

Machine learning library in Ruby

Rubyvis charts

Infer and discover and graph dependencies for ruby and RoR apps during EXECUTION

Simulates MS1 runs given amino acid FASTA files. Outputs an MZML file. Can simulate specific data if given an MZML file containing a single isolated peptide peak.

OAR helper library for prologue/epilogue scripting

A suite for basic and advanced statistics on Ruby