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GEM to annotate bacterial genome sequence based on a reference genome and complete the annotation with an external database.
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 Dependencies

Runtime

>= 1.4.3, ~> 1.4
>= 2.7.3, ~> 2.7
>= 1.9.0, ~> 1.9
 Project Readme

Bacterial-Annotator GEM

Ruby GEM to annotate bacterial genomes based on a reference genome and also complete the annotation with external or remote databases.

To install the gem locally with this package

gem build bacterial-annotator.gemspec
gem install bacterial-annotator-0.0.1.gem	

bacterial-annotator -h

Or you could simply install it from rubygems.org with that command

gem install bacterial-annotator

The blat aligner and the prodigal ORF finder will be installed as dependencies if you accept their licenses.