Project

bacterial-annotator

0.0
Low commit activity in last 3 years
A long-lived project that still receives updates
bacterial-annotatorzorino/bacterial-annotatorHomepageDocumentationSource CodeBug TrackerWiki
GEM to annotate bacterial genome sequence based on a reference genome and complete the annotation with an external database.
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 Popularity
Downloads
89,829
Stars
2
Forks
1
Watchers
2
 Releases
Current version
0.9.4
Total releases
52
First release
2015-02-24
Latest release
2023-07-17
 Issues
Open Issues
1
Closed Issues
1
Total Issues
2
Issue Closure Rate
50%
 Pull Requests
Open Pull Requests
0
Closed Pull Requests
0
Merged Pull Requests
1
Pull Request Acceptance Rate
100%
 Development
Primary Language
Ruby
Licenses
GPL-3.0
Average date of last 50 commits
2018-12-01
Reverse Dependencies
0

 Dependencies

Runtime

bio
~> 1.4, >= 1.4.3
mechanize
~> 2.7, >= 2.7.3
parallel
~> 1.9, >= 1.9.0
 Project Readme

Bacterial-Annotator GEM

Ruby GEM to annotate bacterial genomes based on a reference genome and also complete the annotation with external or remote databases.

To install the gem locally with this package

gem build bacterial-annotator.gemspec
gem install bacterial-annotator-0.0.1.gem	

bacterial-annotator -h

Or you could simply install it from rubygems.org with that command

gem install bacterial-annotator

The blat aligner and the prodigal ORF finder will be installed as dependencies if you accept their licenses.