Primer3-related Ruby code - wrappers, Boulder IO, etc.

A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA metadata) SQLite database.

Parser to work with some file formats used in the velvet DNA assembler

FPKG (gene expression metric) calculator for metatranscriptomics

De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving these draft assemblies.

Predict silk-like proteins from its amino acid sequence.