BioRuby plugin for ChEMBL REST API Client, Parser and Container classes

A parser for CIGAR format alignments.

Programmatic interface to the cNLS nuclear localisation signal prediction software

A dead simple method of running shell commands from within Ruby, by applying opinion

Bioruby core plugins

BioRuby plugins with dependecies from external library or tools

Restriction Enzyme Dataset from REBASE in yaml form

Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags

decoding the dbSNP bitfield containg detaild information

a method to get the nucleotide sequence of translations done by the EMBOSS bioinformatics package program transeq.

This API provides a complete set of methods and classes to access the Ensembl database using Ruby programming language

A Ruby library for the RESTful Ensembl API.

Parse publications for gene names in a fuzzy fashion

Wrapper around the ExportPred algorithm for predicting P. falciparum exported proteins. Requires local install of the program, which is available from http://bioinf.wehi.edu.au/exportpred/

Interface for express beta diversity file formats

ools to work with fasta files, indexed with samtools. The initial releases depend on bio-samtools, but that will change

ruby parser for FastQC, a quality control software for high-throughput sequencing data.

bio-gag is a biogem for detecting and correcting a particular type of error that occurs/occurred in particular versions of the IonTorrent DNA sequencing kit. Recent versions of the system don't appear to suffer the same problem

a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state between two intervals

Bioinformatics. Aggregate FastQC (quality control for Next Generation Sequencing -NGS-) results from many different samples in a single web page, with charts and tables organized and simplified. The main goal is to speed up the communication process with colleagues (PIs, Biologists, BioInformatic...