This biogem is built around Krona, a flashy way of representing hierarchical data.

A fast FASTA/FASTQ parser based on kseq.h by Heng Li

Log4r wrapper for BioRuby

Framework for creating telegram bots.

Some codes for parsing newick tree

Methods for handling multiwell plate annotations, includes ranges and quadrants

Primer3-related Ruby code - wrappers, Boulder IO, etc.

A toolkit for publishing scientific results and datasets using RDF, OWL, and related technologies

Store relationships in a triple-store, such as gene enrichment and QTL, and use this information for inference and causality

New Sambamba library comes with a command-line tool for working with SAM/BAM files. This gem brings some of its functionality to Ruby.

Shogi library

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, but seems to work for the author, at least.

Terraform's HCL lacks quite many programming features like iterators, true variables, advanced string manipulation, functions etc. This Ruby tool provides an easy-to-use DSL to define Terraform compatible .json files which can then be used with Terraform side-by-side with HCL files.

Parses stockholm sequence alignment format

Parser to work with some file formats used in the velvet DNA assembler

Bindings to some internals of the velvet assembler.

Simple script that generates BIP21 URI scheme. More detailed description can be found: https://github.com/bitcoin/bips/blob/master/bip-0021.mediawiki

parse crypto currency from bip0044

Create bitcoin payment requests easily

Finds maximum matchings in weighted bipartite graphs