Server for polymarker. To be used with cron

Just a test

Store relationships in a triple-store, such as gene enrichment and QTL, and use this information for inference and causality

Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for calling mutations in HGVS format and looking up consequences using Ensembl VEP REST API. Developed for calling mutations at an expected position in an alignment - e.g. Amplicon sequencing of CRISPR-induced mutat...

A minimal web service on the top of sinatra to query bam files

Wrapper of samtools for ruby. This project was born from the need to add support of BAM files to the gee_fu genome browser (http://github.com/danmaclean/gee_fu).

Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These entries are used as queries for the Sun Grid Engine (SGE) system. Huge amount of queries are automatically splitted into subdirectories. With a specified command line to be executed, queries are submited to th...

A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA metadata) SQLite database.

Takes a GFF and genomic sequence file, constructs CDS and when given a position and alternative base will report whether this change is in a coding region and if it results in a synonymous or non-synonymous mutation.

Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/

A bioruby plugin for interaction with the transmembrane predictor TMHMM

BioRuby plugin for UniChem REST Web service

Bindings to some internals of the velvet assembler.

Enables the localisation predictor WoLF PSORT to be run locally. The algorithm is available at http://wolfpsort.org/

MongoMapper plugin for first-class documents that can also be embedded

IRB with added functions to require, load and reload files faster

Automate your Bitcoin transactions with this Ruby interface to the bitcoind JSON-RPC API.

A simple ruby wrapper for the bitgram.io payment processing API

bit_hash is a useful tool to pass through options through a string. The best usecases would be forms with binary,trinary, etc etc data sets.

A ruby wrapper for version 3 of the bit.ly API Supports Login/ApiKey & OAuth authentication