Project

unipept

0.01
A long-lived project that still receives updates
Command line interface to the Unipept (http://unipept.ugent.be) web services (pept2lca, taxa2lca, pept2taxa, pept2prot and taxonomy) and some utility commands for handling proteins using the command line.
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 Dependencies

Development

~> 5.18
~> 13.0.1
~> 1.50

Runtime

~> 2.15.10
~> 5.1.0
~> 1.4.0
 Project Readme

unipept-cli

Gem Version

Unipept-cli offers a command line interface to the Unipept web service. Documentation about the web service can be found at http://unipept.ugent.be/apidocs, documentation about the command line tools at http://unipept.ugent.be/clidocs.

Installation

To use the Unipept CLI, Ruby version 2.7 or higher needs to be installed. You can check this by running ruby -v on the commandline:

$ ruby -v
ruby 3.0.0p0 (2020-12-25 revision 95aff21468) [arm64-darwin21]

More information on installing Ruby can be found at https://www.ruby-lang.org/en/installation/

The Unipept CLI is available as a gem. This means it can easily be installed with the following command:

$ gem install unipept
Successfully installed unipept-1.0.1
Parsing documentation for unipept-1.0.1
Done installing documentation for unipept after 0 seconds
1 gem installed

After successful installation, the unipept command should be available:

$ unipept -v
1.0.1

The help can be accessed by running unipept -h.