a method to get the nucleotide sequence of translations done by the EMBOSS bioinformatics package program transeq.

This API provides a complete set of methods and classes to access the Ensembl database using Ruby programming language

A Ruby library for the RESTful Ensembl API.

Parse publications for gene names in a fuzzy fashion

Wrapper around the ExportPred algorithm for predicting P. falciparum exported proteins. Requires local install of the program, which is available from http://bioinf.wehi.edu.au/exportpred/

Interface for express beta diversity file formats

ools to work with fasta files, indexed with samtools. The initial releases depend on bio-samtools, but that will change

ruby parser for FastQC, a quality control software for high-throughput sequencing data.

bio-gag is a biogem for detecting and correcting a particular type of error that occurs/occurred in particular versions of the IonTorrent DNA sequencing kit. Recent versions of the system don't appear to suffer the same problem

a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state between two intervals

Bioinformatics. Aggregate FastQC (quality control for Next Generation Sequencing -NGS-) results from many different samples in a single web page, with charts and tables organized and simplified. The main goal is to speed up the communication process with colleagues (PIs, Biologists, BioInformatic...

GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low memory use and caching of records. Support for external FASTA files.

Ruby wrapper for the gff3-pltools.

A Ruby client for GGGenome the Ultrafast sequence search

Identify causative mutations in a model genome from NGS reads using the NGM method.

A BioGem to submit jobs on a queue system

Encode any message string into a DNA sequence

Enables programmatic parsing of HMMER version 3 reports

Parse PFAM HMM definition files so that the models can be accessible programmatically

Hydropathy scale for BioRuby