Provides PhyloXML support for BioRuby. This bioruby-phyloxml gem replaces old unmaintained bio-phyloxml gem.

Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for calling mutations in HGVS format and looking up consequences using Ensembl VEP REST API. Developed for calling mutations at an expected position in an alignment - e.g. Amplicon sequencing of CRISPR-induced mutat...

A minimal web service on the top of sinatra to query bam files

BioRuby Shell is a command line interface on BioRuby open source bioinformatics library. It provides easy-to-use analysis environment for bioinformatics.

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, but seems to work for the author, at least.

A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA metadata) SQLite database.

Parses stockholm sequence alignment format

Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/

A bioruby plugin for interaction with the transmembrane predictor TMHMM

Ruby FFI binding of the ucsc kent src. Implemented utilities include: bigWigInfo, bigWigSummary and wigToBigWig

BioRuby plugin for UniChem REST Web service

Parser to work with some file formats used in the velvet DNA assembler

bipbop is the best service for consulting brazilian data. See http://bipbop.com.br/ for more information.

Importer for BIPM CGPM and CIPM content

This implementation conforms to BIP-39 and PBKDF2 RFC 2898, and has been tested using the test vectors in https://github.com/trezor/python-mnemonic and Appendix B of RFC 3962.

This implementation conforms to BIP-39/BIP39 and PBKDF2 RFC 2898, and has been tested using the test vectors in https://github.com/trezor/python-mnemonic and Appendix B of RFC 3962. This is a fork of original bip_mnemonic with updates.

Command-line tool to setup your work area quickly and easily. Automate the repetitive steps that you would use to install. Read http://blog.megam.co/archives/485

Bisque exists to ease the organizational pain of having to attach reporting and ad-hoc queries to ActiveRecord models in order to get any class-like behavior out of them by providing a new class and DSL for that express purpose.

Bitbucket API extension

A simple ruby wrapper for the bitgram.io payment processing API