Wrapper of samtools for ruby. This project was born from the need to add support of BAM files to the gee_fu genome browser (http://github.com/danmaclean/gee_fu).

Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These entries are used as queries for the Sun Grid Engine (SGE) system. Huge amount of queries are automatically splitted into subdirectories. With a specified command line to be executed, queries are submited to th...

A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA metadata) SQLite database.

Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This gem includes modules for Regression techniques such as Poisson Regression, Logistic Regression and Exponential Regression

Takes a GFF and genomic sequence file, constructs CDS and when given a position and alternative base will report whether this change is in a coding region and if it results in a synonymous or non-synonymous mutation.

Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/

A bioruby plugin for interaction with the transmembrane predictor TMHMM

BioRuby plugin for UniChem REST Web service

Bindings to some internals of the velvet assembler.

Enables the localisation predictor WoLF PSORT to be run locally. The algorithm is available at http://wolfpsort.org/

MongoMapper plugin for first-class documents that can also be embedded

IRB with added functions to require, load and reload files faster

A simple ruby wrapper for the bitgram.io payment processing API

bit_hash is a useful tool to pass through options through a string. The best usecases would be forms with binary,trinary, etc etc data sets.

A ruby wrapper for version 3 of the bit.ly API Supports Login/ApiKey & OAuth authentication

Использование инфоблоков 1С-Битрикс в Ruby On Rails проектах

A simple client for the BlaBlaCar API (valid credentials required)

Simple gem for handling positive and negative likes.

A gem that analyses your currently installed set of RubyGems and looks ahead to see how close to the 'bleeding edge' of each gem you are. Produces report to show how up-to-date your gems are.

best thing since sliced bread