Some codes for parsing newick tree

Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server were still alive. It overrides methods and objects in Bio::Fetch, and if the old BioRuby BioFetch server's URL is given, it intercepts all requests and converts them into existing web services such as TogoWS, KE...

API of Picard tool

An MCP server that provides access to BioRuby KEGG functionality, allowing AI assistants to query KEGG databases for biological pathways, compounds, and other molecular information.

Provides PhyloXML support for BioRuby. This bioruby-phyloxml gem replaces old unmaintained bio-phyloxml gem.

New Sambamba library comes with a command-line tool for working with SAM/BAM files. This gem brings some of its functionality to Ruby.

Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for calling mutations in HGVS format and looking up consequences using Ensembl VEP REST API. Developed for calling mutations at an expected position in an alignment - e.g. Amplicon sequencing of CRISPR-induced mutat...

BioRuby Shell is a command line interface on BioRuby open source bioinformatics library. It provides easy-to-use analysis environment for bioinformatics.

Shogi library

Gem wrapping biostars.org public API

Simple script that generates BIP21 URI scheme. More detailed description can be found: https://github.com/bitcoin/bips/blob/master/bip-0021.mediawiki

A ruby library to generate Ethereum addresses from a hierarchical deterministic wallet according to the BIP44 standard. (Extended)

parse crypto currency from bip0044

Create bitcoin payment requests easily

Finds maximum matchings in weighted bipartite graphs

Library for communicating with BIPBOP

Importer for BIPM CGPM and CIPM content

The ruby implementation of bip-schnorr.

Seeeeeeeee Readme

A Ruby Web API Framework for CollectionJSON (and maybe more in the future).